Conda install libhdf5. h: No such file or directory的错误.
Conda install libhdf5 arch -arm64 brew install hdf5 Step 2: Find the directory of hdf5 and hdf5. For example, hdf5. 7 -y conda activate caffe 下载GitHub上的caffe框架 git clone https: Mar 22, 2021 · Here are some steps you can follow to install hdf5 on macOS M1. What is libhdf5-dev. 04) already shipped with libhdf5-dev at version 1. conda uninstall h5py. e. Share. 12. 4 from conda¶ If you are a conda user, the simplest way to obtain a version of hdf5 that is stable across platforms is using conda. To install the HDF5 C library without MPI support: for MPI support you'd install libhdf5-openmpi-dev. In C and Fortran, parallel hdf5 works quite well. Jul 30, 2015 · I am trying to install tables package in Ubuntu 14. To maximize compatibility, those binaries are built without optimization options (such as AVX2 and OpenMP). 29; win-64 v0. c. I want to use h5py which needs libhdf5-dev to be installed. In Ubuntu is: sudo apt-get install libhdf5-serial-dev netcdf-bin libnetcdf-dev. To install this package run one of the following: conda install anaconda::hdf5 Description HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. 只要安装libhdf5-serial-dev就可以了。 执行命令： $ sudo apt-get install libhdf5-serial-dev. 04. install a ARM64 version of clang: conda install -c conda-forge clang_osx-arm64; install a ARM64 gfortran: conda install -c conda-forge gfortran_osx-arm64; install binutils: conda install -c conda-forge binutils; install R in conda: conda install -c conda-forge r-base; install hdf5: conda install -c conda-forge apt install libhdf5-serial-dev libnetcdf-dev. However if you are installing from source then you also don’t need Conda. /configure --enable-parallel make sudo make install Q：如何在Python中使用HDF5？ A：Python有一个名为h5py的库，可以用于读写HDF5文件。你可以使用以下命令安装它： pip install h5py 然后，你可以使用以下代码读取一个HDF5文件： You signed in with another tab or window. Jul 3, 2023 · I am using python 3. I am also using a conda environment to manage packages required for post-processing in Python, and for starting parameter combination runs that c Jul 14, 2023 · 你可以在 Ubuntu 上通过以下命令安装 libhdf5： ``` sudo apt-get install libhdf5-dev ``` 这将安装 libhdf5 的开发包，包括头文件和库文件。如果你只需要运行时库文件，你可以使用以下命令： ``` sudo apt-get install libhdf5-serial-dev ``` 这将安装 HDF5 序列版的运行时库文件。 Oct 10, 2023 · 上找到原因可能是在annaconda环境下没有找到正确的libhdf5_hl. Feb 18, 2025 · The h5py package provides both a high- and low-level interface to the HDF5 library from Python. cudatoolkit from conda clashes with nvidia drivers from Ubuntu. h*" # use sudo if possible INSTALL - Start Here. However, things get muddy when I’m following this guide to install parallel h5py , and trying to run the demo code. 10, libhdf5_hl. or hdf5-openmpi for HDF5 with OpenMPI support. Apr 4, 2023 · I think you should be able to install BPCells okay once pkg-config is running. Jan 11, 2023 · sudo apt-get install libhdf5-dev 注意 ：以上命令将安装 hdf5 开发库版本 1. 9 -i https://www. I think your problem is that you need to have the conda environment activated at install time. This is the preferred solution on clusters. Such a repository is known as a feedstock. The API Compatibility Macros in HDF5. It is implemented using R6 classes based on the HDF5-C-API. x. 3w次，点赞18次，收藏51次。关于python 中h5py库安装不上的解决办法问题解决步骤1、先安装wheel这个库，方法就是从命令行中输入pip install wheel2、下载自己对应的h5py的版本，网址如下3、下载好了就可以用命令行来安装这个库了问题最近在学吴恩达的深度学习，想着根据看的内容写点代码 Jun 20, 2021 · The following additional packages will be installed: hdf5-helpers libaec-dev libaec0 libhdf5-100 libhdf5-cpp-100 libsz2 Suggested packages: libhdf5-doc The following NEW packages will be installed: hdf5-helpers libaec-dev libaec0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libsz2 0 upgraded, 7 newly installed, 0 to remove and 2 not upgraded. 0; conda install To install this package run one of the following: conda install conda-forge::liblapack May 20, 2019 · 我正尝试在Python代码中导入H5PY，但找不到该模块。我使用的是Ubuntu 16. packages() or BiocManager::install(). The low-level interface is intended to be a complete wrapping of the HDF5 API, while the high-level component supports access to HDF5 files, datasets and groups using established Python and NumPy concepts. . Source installation on Windows Installing from source on Windows is a much more difficult prospect than installing from source on other OSs, as not only are you likely to need to compile HDF5 from source, everything must be built with the correct version of Visual They can usually be found in python-dev or similar and libhdf5-dev or similar. Users can specify a To install this package run one of the following: conda install anaconda::libopenblas. ##### 12192024 update 最近iMac更换之后之前的设置都清空了，所以再次install BPCells package, 我按照上述的步骤，所有流程都跑 了一遍，发现又遇到了新的问题。 Mar 23, 2016 · conda install hdf5and conda install netcdf4 – N1B4. / configure --prefix = / usr / local / hdf5 # 指定安装路径 sudo make sudo make install 如果不需要安装C++库，可以直接使用命令行安装： sudo apt-get install libhdf5-dev ubuntu 16. 100: cannot open shared object file: No such file or directory原因：缺少了若干模块解决方案：直接安装底下命令建议一行一行输入：搞了我好几天累死pip3 install opencv-contrib-python==3. OpenBLAS is based on GotoBLAS2 1. Source installation on Windows Installing from source on Windows is a much more difficult prospect than installing from source on other OSs, as not only are you likely to need to compile HDF5 from source, everything must be built with the correct version of Visual To install this package run one of the following: conda install free::hdf5 Description HDF5 is a data model, library, and file format for storing and managing data. sudo apt-get install libhdf5-serial-dev. . Went through a whole hell with it. allow users to work around this issue. you can now (in 1-2h) conda install -c conda-forge qe hdf5r is an R interface to the HDF5 library. 2. 11. I'm sure it's possible, but I couldn't figure it out. 6 and have already downloaded HDF5 1. 29; conda install To install this package run one of the following: conda install conda-forge::libopenblas dep: hdf5-helpers HDF5 - Helper tools dep: libaec-dev Development files for the Adaptive Entropy Coding library dep: libhdf5-103-1 (= 1. pc and add it to the PKG_CONFIG_PATH. So assuming the conda environment is called base, you would do: macOS (using Homebrew or Conda) brew install hdf5 or conda install -c anaconda hdf5: Debian-based systems (including Ubuntu) sudo apt-get install libhdf5-dev: Systems supporting yum and RPMs: sudo yum install hdf5-devel: Windows: Go to HDF5 website and download the proper installer Aug 31, 2023 · I'm attempting to install Rhdf5lib on a docker container based on the ubuntu:focal image. Source installation on Windows Installing from source on Windows is a much more difficult prospect than installing from source on other OSs, as not only are you likely to need to compile HDF5 from source, everything must be built with the correct version of Visual Mar 26, 2024 · conda install -c conda-forge r-harmony conda install bioconda::bioconductor-glmgampoi conda install -c conda-forge r-R. 04 on Windows 11 system. HDF5 C++ 使用 QtCreator配置HDF5库 1）打开Qt Creator新建一个Qt Console Application程序。 They can usually be found in python-dev or similar and libhdf5-dev or similar. 04和Python 2. General instructions for compiling and installing the library INSTALL_CMAKE - instructions for building with CMake (Kitware. ANACONDA. 目的Linux および Windows 11 環境に HDF5 1. copied from cf-staging / hdf5plugin Oct 10, 2018 · The fix is easy if you have an updated conda executable. The conda-forge organization contains one repository for each of the installable packages. 04 安装 hdf5-1. The package supports all data-types as specified by HDF5 (including references) and provides many convenience functions yet also an extensive selection of the native HDF5-C-API functions. 12 最近我安装了 h5py - 没有麻烦，我安装的包版本： conda install To HighFive is a modern C++/C++11 friendly interface for libhdf5. I searched for several cases on Jun 22, 2023 · 在Linux上，可以使用以下命令安装： ``` sudo apt-get install libhdf5-dev ``` 在macOS上，可以使用以下命令安装： ``` brew install hdf5 ``` h5py安装 conda ### 使用 Conda 安装 h5py 的方法 #### 创建并激活 Anaconda 虚拟环境 为了确保不同项目之间的依赖关系不会相互冲突，建议先创建 Quick Install Guide¶ This quick install guide outlines the basic steps needed to install OpenMC on your computer. 9是这个channel里面支持mpi的第一个版本。 关于 python 环境中 hdf5 报错问题的几种 解决 办法（亲测） Jan 30, 2021 · 上找到原因可能是在annaconda环境下没有找到正确的libhdf5_hl. brew uninstal hdf5 --ignore-dependencies Step 1: Install hdf5 with brew. We foster an inclusive and collaborative community of developers and data scientists. 13=h9b0a68f_1105 -c conda-forge” for “sudo apt install libpng-dev” “conda install cmake=3. My build command line is as below: Apr 8, 2020 · anaconda安装支持mpi并行化的h5py 参考这里，可以用conda install "h5py>=2. As a side note, the relevant environment variable for linking issues like this is LD_LIBRARY_PATH not PATH, and if you want to manually edit your environment variables you'll need to include a folder that contains a file named libhdf5. apt: sudo apt-get install libhdf5-dev; yum: sudo yum install hdf5-devel; conda: conda install -c anaconda hdf5. Dec 7, 2019 · Hi, The hardware I am using is ODROID C2, which has an ARM based processor. lib is the shared library and libhdf5. 200 was missing). However, seems like I cannnot find any hdf5 package to install before tables. – algoquant Jun 14, 2016 · Hi, I have been trying to install Opencv on OS X El Capitan 10. But when I enter my anaconda python configuration the highest In this tutorial we learn how to install libhdf5-dev on Ubuntu 22. 12 c++库. Jun 2, 2020 · 上找到原因可能是在annaconda环境下没有找到正确的libhdf5_hl. Installing on Linux/Mac with conda-forge¶ Jan 23, 2023 · conda install -c anaconda h5py pip install h5py sudo apt-get install pkg-config libhdf5-100 libhdf5-dev sudo apt-get install -y libhdf5-dev I'm using anaconda, WSL (ubuntu), and VCS with python 3. 100加载出来，就可以成功install了。2，打开conda环境下的R，输入Sys. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis. HDF5 was designed and implemented to address the deficiencies of HDF4. Step 0 (optional): Uninstall hdf5 with brew if you have installed. Nov 19, 2016 · 提示我们h5cc没有安装，按照指示，我们输入sudo apt install hdf5-helpers. 9 in a local env. 0 requests version Oct 30, 2018 · 上找到原因可能是在annaconda环境下没有找到正确的libhdf5_hl. In general, I always try to do this before doing any installation that requires compilation (but had forgotten to today on a new system). 04 but sems like it is complaining. 2=h5432695_0 -c conda-forge” for “sudo apt install cmake” then pointed to the local g++ compiler and it worked. 接下来再执行，却报出hdf5. 3 install. HDF5 is a data model, library and file format for storing and managing large amounts of data. Mar 31, 2025 · conda install -c conda-forge hdf5plugin. conda create -n Seuratv5 conda install r-base=4. Figure out how to use it. 4, and this conflicted somehow with my installed version 1. The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. It seems that Conda containers can get I am using linux ubuntu 18. 29; linux-ppc64le v0. 4k次，点赞4次，收藏11次。sudo apt-get install libhdf5-devsudo apt-get install libhdf5-serial-devsudo apt-get install libcblas-devsudo apt-get install libatlas-base-devsudo apt-get install libjasper-devsudo apt-get install libqtgui4sudo apt-get install libqt4-test最后随手sudo ap_importerror: libhdf5. In order to provide high-quality builds, the process has been automated into the conda-forge GitHub organization. You signed out in another tab or window. 0 from source I ended up using another python environment outside of anaconda (using pip and virtualenv) for this project. Could anyone explain the procedure to follow? Nov 3, 2020 · pip install --upgrade pip setuptools wheel I installed the libhdf5. 100，就可以成功安装了。1，在终端把 It's going to depend on your Ubuntu version I think: newer versions use an explicit serial subdirectory IIRC. Let’s build and install h5py: HDF5_DIR=$CONDA_PREFIX python -m pip install --no-binary=h5py --no-build-isolation h5py. I am trying to install it using PyCharm and its package installer, however seems like it is complaining about HDF5 package. 8. 100 The title here says it all. Just run conda deactivate to get out of any conda environment before running R. For example h5py 2. For more detailed instructions on configuring and installing OpenMC, see Installation and Configuration in the User’s Manual. 1 をインストールし、自分の C++ プログラムにリンクして使う。ビルドには CMake を使う。HDF5 とは何… conda-forge is a community-led conda channel of installable packages. h. 5 using pip and using conda install. To install this package run one of the following: conda install conda-forge::hdf5 conda install conda-forge/label/broken::hdf5 conda install conda-forge/label/cf201901::hdf5 Aug 30, 2016 · sudo yum -y install hdf5-devel. Indeed, I could see a package called hdf5. 100，就可以成功安装了。1，在终端把 Sep 8, 2022 · . First, conda should be installed with either Anaconda Distribution or Miniconda. Go to the libraries directory: cd /usr/lib/x86_64-linux-gnu Set LD_LIBRARY_PATH for libraries in Anacoda, such as libhdf5. p_在树莓派上安装libhdf5. Once you have conda May 5, 2015 · 然后我就放弃了，在python中直接在自己创建的虚拟环境中pip install h5py，也可以在系统上安装全局的库python -m pip install h5py。然后在下面的网站下载安装了HDF的plugin之后，【具体安装过程在网址。中可以看到】就提示下面的错误。 Nov 8, 2022 · Just to check, Conda should be installed on Ubuntu inside of WSL, not on Windows outside of the WSL world. Commented Mar 22, sudo apt-get install libhdf5-serial-dev netcdf-bin libnetcdf-dev. Dec 19, 2024 · Finally, I successfully installed the BPCells package in the Rstuido. so. lib is the static library. 0, even in a separate environment and using my own conda recipe. sudo apt install g++ cmake libhdf5-dev libpng-dev Mar 19, 2022 · 文章浏览阅读3. 10 ships with libhdf5 1. Aug 5, 2021 · sudo apt install hdf5-helpers. If you know a better / proper way to solve it, let me know. 100地址，添加LD_LIBRARY_PATH，然后手动把libhdf5_hl. utils conda install -c conda-forge r-SingleCellExperiment conda install -c conda-forge r-monocle3 conda install -c conda-forge r-SeuratWrappers conda install bioconda::r-liger conda install cmake conda install blas Nov 9, 2023 · I am trying to compile C++ code that requires HDF5. conda uninstall tensorflow. 29; osx-arm64 v0. Source installation on Windows ¶ Installing from source on Windows is a much more difficult prospect than installing from source on other OSs, as not only are you likely to need to compile HDF5 from source, everything must be built with the correct version of Visual Jan 29, 2018 · The command: conda install -c conda-forge <package> Has worked much better for me than: conda config --append channels conda-forge Which causes conda to go into an endless "Solving environment" loop. 103: cannot open shared object file: no such file or Feb 20, 2018 · Hi Ayan, did you try it with a clean environment (e. and reinstalled tensorflow by: conda install -c anaconda tensorflow Apr 19, 2020 · If you're using R installed via conda then I recommend installing the packages with conda too, rather than using install. Note: Linux users should prefer their distro's package manager (e. After installing HDF5 1. Read and write HDF5 files from Python. Then launch R and install the package. What I eventually found out is that the system (Ubuntu 20. Installation from source Mar 10, 2019 · I came across exactly the same problem today (perhaps the only difference is that it complaint libhdf5. 测试. A framework for the analysis and exploration of single-cell chromatin data. Let me know if it works linux-aarch64 v3. 0; osx-arm64 v1. 3. 4 while currently we are at libhdf5 1. On macOS: brew install netcdf-cxx, Conda can also be used to install the dependencies instead: 这可能是集群上预先编译好的hdf5 存在问题，或者缺少h5py文档中提到的 libhdf5-dev ，安装后者需要root权限，sudo apt-get install libhdf5-dev ，显然我是没有权限的。于是只能在自己的目录下手动编译Parallel hdf5。 Jan 3, 2019 · Hi, I encountered a similar issue. You switched accounts on another tab or window. Mar 23, 2016 · You need to install the HDF5 libraries for your Linux distribution. On ArchLinux you install. 100，就可以成功安装了。 Quick Install Guide¶ This quick install guide outlines the basic steps needed to install OpenMC on your computer. package(c('repr','IRdisplay','evaluate','crayon','pbdZMQ','uuid','digest','devtools')) #devtools安装报错，提示没有usethis #一气之下，我选择使用conda安装 conda install -c bioconda r-devtools devtools::install_github Jan 29, 2024 · I have configured a parallel version of hdf5 on my WSL2 Ubuntu 22. If you're on a cluster, HDF5 has almost certainly been installed for you. 9. About Us Anaconda Cloud They can usually be found in python-dev or similar and libhdf5-dev or similar. Source installation on Windows ¶ Installing from source on Windows is a much more difficult prospect than installing from source on other OSs, as not only are you likely to need to compile HDF5 from source, everything must be built with the correct version of Visual They can usually be found in python-dev or similar and libhdf5-dev or similar. 0; linux-ppc64le v3. 1. libhdf5-dev is: Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. 再执行 sudo h5cc -o h5_extend h5_extend. By data scientists, for data They can usually be found in python-dev or similar and libhdf5-dev or similar. 0; osx-64 v3. Reload to refresh your session. 14 by default. 04 and compiled ismrmd and siemens_to_ismrmrd now when I try to run the siemens_to_ismrmrd using the following command: siemens_to_ismrmrd -f meas_MID03485_FID51095_se. This package provides a nearly feature complete, object oriented wrapper for the HDF5 API. 1. Currently we have one libhdf5 deployed per h5py version (both pypi and conda) which does not allow including bug fixes in libhdf5. 5. Installation from source can achieve better performances than pre-built binaries. Info: This package contains files in non-standard labels. Aug 15, 2021 · I'm wondering what the strategy is of releasing h5py on pypi and conda. 0; conda install To install this package run one of the following: conda install conda-forge::libblas I couldn't force conda to install HDF5 1. The solution is to use the system HDF5 rather than the one from conda. 29; osx-64 v0. 0; osx-64 v1. Sep 8, 2019 · conda install -c conda-forge tensorflow. OpenMC can be installed in a conda environment. 23. da Nov 20, 2024 · 新建一个conda环境，安装4. c，直到执行后没有错误显示 Mar 15, 2023 · 0. Description. 再次执行 $ sudo h5cc -o h5_extend h5_extend. 6+repack-4+deb11u1) Jesus, never again. When using conda instead of pip for the install, h5py installs its own version of hdf5 library files which are not compilable and cause errors when installing other software that depends on h5py and hdf5. The options to pip ensure building h5py from source code and using the Python packages available in the virtual environment. 10. 0; linux-64 v1. 3 through Anaconda, with the following particulars: platform : osx-64 conda version : 4. To install from source and recompile the HDF5 plugins, run: pip install hdf5plugin --no-binary hdf5plugin [--user] conda install hdf5 和conda install 您需要为Linux发行版安装HDF5库。在Ubuntu中是： sudo apt-get install libhdf5-serial-dev netcdf-bin libnetcdf-dev Jul 14, 2023 · conda 不支持直接安装 libhdf5-dev，因为它是一个系统级库，需要使用操作系统的包管理器进行安装。如果您使用的是 Ubuntu 或 Debian 等基于 Debian 的发行版，可以使用以下命令安装： ``` sudo apt-get install libhdf5-dev ``` 如果您使用的是 CentOS 或 Fedora 等基于 Red Hat 的发行版，可以使用以下命令安装： ``` sudo yum HDF5 Plugins for windows, MacOS, and linux. g. I installed hdf5 from the source, and thought that any options with compiling that one would offer me the developer headers, but doesn't Sep 19, 2024 · conda install numpy cython -c conda-forge. I first ran sudo apt-get install python3-h5py and then in the virtualenv I ran pi 文章浏览阅读1w次，点赞11次，收藏31次。ImportError: libhdf5_serial. Or see the file list at File list of package libhdf5-dev in xenial of architecture amd64 linux-aarch64 v0. 13 BSD version. 0; osx-arm64 v3. I resolved it as follows: I uninstalled h5py and tensorflow by: pip uninstall h5py. com) INSTALL_parallel - instructions for building and configuring Parallel HDF5 INSTALL_Windows and INSTALL_Cygwin - MS Windows installations. By data scientists, for data scientists. Installing HDF5 >=1. apt or yum) when possible, as it appears to give a slightly more reliable installation experience. 0; win-64 v3. 9=mpi*"通过conda安装支持mpi并行的h5py，其中2. Conda is an open source package management system and environments management system for installing multiple versions of software packages and their dependencies and switching easily between them. shared-libraries conda I'm in a conda virtual environment on Windows. 7。 我尝试过使用conda和pip以及单独使用下面的sudo pip install cython sudo apt-get install libhdf5-dev sudo pip install h5py重新安装h5py，但仍然不起作用。 Jan 31, 2021 · 文章浏览阅读1. 7. Trying to install h5py as it is a dependency of one the packages I need to use. Installing on Linux/Mac with Conda¶ linux-aarch64 v1. 28. The command to type is: To install this package run one of the following: conda install anaconda::h5py. Dec 4, 2021 · Use the new cmake route to install QE (see example instructions here) which should be more robust and will likely replace the configure route at some point in the future; For the cherry on top, I just added HDF5 support to the qe conda-forge feedstock, i. Apr 9, 2023 · Hi, thanks for your interest in BPCells. 3版本的R，并将此版本的R内核添加到Jupyter. 10: pypi, to install run: pip install hdf5plugin [--user] conda-forge, to install run: conda install-c conda-forge hdf5plugin. Feb 7, 2018 · Note: this is a quick fix for a minor bug / issue with the version of libhdf5. 0; linux-64 v3. See this link. The same applies for installing system libraries like libcurl. Static libraries begin with lib and shared libraries do not. I am stuck on a compilation issue regarding the internal hdf5 library included in this package. final. 0; conda install To install this package run one of the following: conda install bioconda::bioconductor-rhdf5lib Aug 1, 2023 · sudo apt-get install libhdf5-dev 完成安装。 conda create -n caffe python=2. 100，就可以成功安装了。1，在终端把 linux-aarch64 v3. Applications that were created with earlier HDF5 releases may not compile with 1. And then, to install cudatoolkit, it demands you delete the (compatible) drivers installed by Ubuntu for Nvidia. The first command in the install from source section should install hdf5. I went to HDF5 anaconda package website, copied the installation command from there (conda install anaconda::hdf5) and pasted it into my PowerShell. If this section doesn't apply to you, omit it. Jun 8, 2022 · for “sudo apt install libhdf5-dev” “conda install libpng-devel-cos7-x86_64=1. getenv("LD_LIBRARY_PATH")检查。3，手动加载libhdf5_hl. 0. May 31, 2023 · conda 不支持直接安装 libhdf5-dev，因为它是一个系统级库，需要使用操作系统的包管理器进行安装。如果您使用的是 Ubuntu 或 Debian 等基于 Debian 的发行版，可以使用以下命令安装： ``` sudo apt-get install libhdf5-dev ``` 如果您使用的是 CentOS 或 Fedora 等基于 Red Hat 的发行版，可以使用以下命令安装： ``` sudo yum Link against the latest packaged version of libhdf5 and leave it at that; Provide packages linking to different versions of libhdf5, with the hdf5 version included in the version tag; Provide packages with and without libhdf5 dependencies, with the version tag specified so that installing with HDF5 is preferred INSTALL - Start Here. Make sure you have HDF5 installed via sudo apt-get install libhdf5-dev. creating a new environment with conda create)? Btw, I would try the solution to re-install h5py, as discussed in the issue you mentioned: pip uninstall h5py pip install --no-cache-dir h5py. 29; linux-64 v0. The system continues to complain AttributeError: module ‘h5py’ has no attribute ‘File’. 5 conda-build version : 0+unknown python version : 3. create a new Conda environment. Once the installation was completed, I checked the list of packages with the command conda list. Regardless you can do dpkg -L libhdf5-dev. so library by running below code and that solved it for me: sudo apt-get install libhdf5-dev I've come across similar PEP 517 errors caused by missing dependencies: ERROR: Could not build wheels for glpk which use PEP 517 and cannot be installed directly Listing versions with conda search hdf5 did not tell me which was which, and in fact the earliest version I could install with conda was version 10. 没有问题，执行 Apr 6, 2023 · same here, i'm running into the same issue as @sanderslhc I installed hdf5 from source and can successfully run h5cc -showconfig and it's in path! During the install process it runs pkg-config hdf5 --cflags --libs to validate that hdf5 exists and it's not finding it, so it's suggesting we find a non-existing file: hdf5. h: No such file or directory的错误. sudo find / -iname "*hdf5.
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